Needle
An application for fast and efficient searches of NGS data.
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build
seqan-needle-DfEdvf
seqan-needle-1.0.2+ds
include
estimate.h
Go to the documentation of this file.
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// -----------------------------------------------------------------------------------------------------
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// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin
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// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik
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// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
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// shipped with this file and also available at: https://github.com/seqan/needle/blob/master/LICENSE.md
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// -----------------------------------------------------------------------------------------------------
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#pragma once
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#include <filesystem>
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#include "
shared.h
"
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struct
estimate_arguments
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{
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std::filesystem::path
search_file
;
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std::filesystem::path
path_in
{
"./"
};
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// false: no normalization method, true: division by first expression value
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bool
normalization_method
{0};
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};
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void
call_estimate
(
estimate_ibf_arguments
& args,
estimate_arguments
& estimate_args);
call_estimate
void call_estimate(estimate_ibf_arguments &args, estimate_arguments &estimate_args)
Function, which calls the estimate function.
Definition
estimate.cpp:270
shared.h
estimate_arguments
The arguments necessary for a search.
Definition
estimate.h:22
estimate_arguments::normalization_method
bool normalization_method
Definition
estimate.h:26
estimate_arguments::path_in
std::filesystem::path path_in
Definition
estimate.h:24
estimate_arguments::search_file
std::filesystem::path search_file
Definition
estimate.h:23
estimate_ibf_arguments
arguments used for estimate, ibf, ibfmin
Definition
shared.h:41
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